FHIR-to-OMOP
An end-to-end clinical data pipeline mapping FHIR to OMOP CDM v5.4. Features DuckDB, RAG-driven semantic mapping, Human-in-the-Loop governance, and OHDSI DQD validation.
An end-to-end Health Data Engineering and Real-World Evidence (RWE) pipeline. This framework extracts raw clinical data from FHIR JSON bundles, standardizes it into the OMOP Common Data Model (v5.4), and maps messy/legacy clinical text using a Retrieval-Augmented Generation (RAG) + Human-in-the-Loop Architecture.
⚡ How to use FHIR-to-OMOP
Indexed from GitHub. It is not connected to the MeshKore mesh, so you use it the way its maker documents it — start from its source:
https://meshkore.com/agent/mrcosta77-fhir-to-omopCapabilities
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